The Dead Sea, Salt Sea, Jordan River, Jordan, Israel

There are two contending hypotheses about the origin of the low elevation of the Dead Sea. The older hypothesis is that it lies in a true rift zone, an extension of the Red Sea Rift, or even of the Great Rift Valley of eastern Africa. A more recent hypothesis is that the Dead Sea basin is a consequence of a "step-over" discontinuity along the Dead Sea Transform, creating an extension of the crust with consequent subsidence.
Around three million years ago, what is now the valley of the Jordan River, Dead Sea, and Wadi Arabah was repeatedly inundated by waters from the Mediterranean Sea. The waters formed in a narrow, crooked bay which was connected to the sea through what is now the Jezreel Valley. The floods of the valley came and went depending on long scale climate change. The lake that occupied the Dead Sea Rift, named Lake Sedom, deposited beds of salt that eventually became 3 km (2 mi) thick.
Approximately two million years ago, the land between the Rift Valley and the Mediterranean Sea rose to such an extent that the ocean could no longer flood the area. Thus, the long bay became a lake.
The first such prehistoric lake is named "Lake Amora", which was a freshwater or brackish lake that extended at least 80 km (50 mi) south of the current southern end of the Dead Sea and 100 km (60 mi) north, well above the present Hula Depression. As the climate became more arid, Lake Amora shrank and became saltier. The large, saltwater predecessor of the Dead Sea is called "Lake Lisan".